SE3810105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8423
  • Solanum tuberosum
  • SE3810105
  • Tc1/Mariner
  • St1
  • chr06:20926258-20926545
  • TA
  • TACTCCCTTTGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                -------A     TTGTCCATTTTTGACTTGGCATGCCTATTAAGAAAATAGTAATTGACATAATGAGTTTACCATTTTACCCCTATTAATTGATAGAATTCCAAAATCAATTTACCCATTAAAGAGGTTT
TACTCCCTTTGTCCCT        TTTAC                                                                                                                      
||||||||||||||||        |||||                                                                                                                      T
ATGAGGGAGACAGGGA        CAGTT                                                                                                                      
                AAAATGAA     TAAAGCTGAAAAATGAACAGGTAAAAATGAAAAGTAAAAACTGTTTAGTTCTTTTCTGTTATAAAAAATGTATGATATGGGAATTAAATAAATCTCTCAATTACAAAAACTTTTTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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