SE3830107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8425
  • Solanum tuberosum
  • SE3830107
  • hAT
  • Hat21
  • chr01:79781109-79781308
  • TTGTTTCC
  • CAGTGTTCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTTCC           AAAGC      TTCA  A -   -----   CGATGAAGCGAACCGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGA
        CAGTGTTCAGG     GAGCGC    TC C TTA     AAG                                                         
        |||||||||||     ||||||    || | |||     |||                                                         G
        GTCACAAGTCC     TTCGCA    CT T GCC     TCG                                                         
CCTTTGTT           ----C      ----  - C   TTTTT   CTATTCCGGGGCTAAGTGCGAAATTCACTACTTCGCGAGCGAATTTCGCTACTTCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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