SE3820108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8426
  • Solanum tuberosum
  • SE3820108
  • Mutator
  • M29
  • chr09:36786050-36786376
  • TTAATTAAG
  • TAATTAAGGGAAAATGCATAAGTACCCCCCCAACCTATGCCCGAAATTTCAGAGACACGCTTATACTATACTAAGGGCCTATTACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
T       -                       C   C    C                                    G          CCCC C                                                      TTT    CCCCGCGC  GT
 TAATTAA GGGAAAATGCATAAGTACCCCCC AAC TATG CCGAAATTTCAGAGACACGCTTATACTATACTAAGG CCTATTACCT    C CGAACTTATTTTATAAATAATTTTCTACCTCTTTTCGGCCTACGTGGCACTATT   TGGA        GT  
 ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||        ||   
 ATTAATT CCCTTTTACGTATTCATGGGGGG TTG ATAC GGCTTTAGGGTCTCTGTGTGAATATGATATGATTCC GGATAATGGG    G GCTTGAATAAAATATTTATTAAAAGATGGAGAAAAGCCGGATGCACCGTGATAG   ACTT        CA  
        T                       -   A    A                                    A          ---C A                                                      -TT    --TTTTAA  GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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