Plant MITE

SE3820111

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8429
Solanum tuberosum
SE3820111
Mutator
M8
chr06:10161859-10162183
TAAATTTTA
TAAATTTTAGGCATAATACATAAACATGACCATTAACTTGCTTCAGCGGACAACTATGTCCTCCAACTTTGAGTATGCACAAGTAGGCACTTAAACTTGTATAAAATTGAATAAGTAGACACATGT

Secondary structure and sequence

TSD TIR

5'

3'

    T                          A        - T     -  A        T   CC       A  A                                                 G -   -       ACTTAATACATGTAGGACGCCACGT
TAAA TTTAGGCATAATACATAAACATGACC TTAACTTG C TCAGC GG CAACTATG CCT  AACTTTG GT TGCACAAGTAGGCACTTAAACTTGTATAAAATTGAATAAGTAGACACAT T GTC CTACATG                         
|||| |||||||||||||||||||||||||| |||||||| | ||||| || |||||||| |||  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||                          
ATTT AAATCCGTATTATGTATTTGTACTGG AATTGAAC G AGTCG CC GTTGATAC GGA  TTGAAAC TA ACGTGTTCATCTGTGAATTTGAACATATTTTAACTTGTTTATCTGTGTA G TGG TGTACCG                         
    T                          A        C C     G  -        T   AA       C  C                                                 G T   A       TGGAATGTACCTCTAAAACACAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820111

TAAATTTTAGGCATAATACATAAACATGACCATTAACTTGCTTCAGCGGACAACTATGTCCTCCAACTTTGAGTATGCACAAGTAGGCACTTAAACTTGTATAAAATTGAATAAGTAGACACATGTGTCCTACATGACTTAATACATGTAGGACGCCACGTAGGACACAAAATCTCCATGTAAGGTGCCATGTAGGTTGGATGTGTCTATTTGTTCAATTTTATACAAGTTTAAGTGTCTACTTGTGCACATCCAAAGTTAAAGGTCATAGTTGCCGGCTGACGCCAAGTTAAAGGTCATGTTTATGTATTATGCCTAAATTTTA

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