SE3820113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8431
  • Solanum tuberosum
  • SE3820113
  • Mutator
  • M8
  • chr01:84387160-84387445
  • AAAAATAAT
  • TGGCATAATACATAAACAAACTTTGCTTTAGCGGATAACTATGCCCTTCAACTTTGAGTGTGTACAAATAGGCACTTAAACTTGTATAAAATTAAACAAGTAGACACATGTGTCCTACATGGCATAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATAA                  --------     T  T     G          C   TC  C    A          A                         A       A       G               AA  CA
        TGGCATAATACATAAACA        AACTT GC TTAGC GATAACTATG CCT  AA TTTG GTGTGTACAA TAGGCACTTAAACTTGTATAAAATT AACAAGT GACACAT TGTCCTACATGGCAT  TA  
        ||||||||||||||||||        ||||| || ||||| |||||||||| |||  || |||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||  ||   
        ACTGTATTATGTATTTGT        TTGAA CG AGTCG CTGTTGATAC GGA  TT AAAC CACACGTGTT ATCCGTGAATTTGAACATATTTTAA TTGTTTA CTGTGTA GCAGGATGTACCGTA  AT  
TAATAAAA                  ACAAGAAA     C  C     A          T   TA  A    C          C                         C       C       A               GG  AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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