SE3810114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8432
  • Solanum tuberosum
  • SE3810114
  • Tc1/Mariner
  • St5
  • chr06:2708507-2708757
  • TA
  • TACTCCCTCCATTTCAATTTGATAGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A          ATA    -------------   -   --   TTGA     AATTTAACAAAGTAAAGAAGACTTTTGAATCTTGTGGTCGTAAACTAAAGATACGTTGAATGTACCAAAATGT
TACTCCCTCC TTTCAATTTG   GTCT             GGT TTT  GAC    CACAA                                                                         
|||||||||| ||||||||||   ||||             ||| |||  |||    |||||                                                                         C
ATGAGGGAGG AAAGTTAAAC   CAGA             TCA ACA  TTT    TTCTT                                                                         
          C          AAA    ATTAAAGGAAAAA   G   AA   ----     ACAAAGAAAGGAAAGAACTGTTGAGAAATTAAAGTTAAAAGGTGCACTGTAAAAATTCTGGTGTTCTAATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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