SE3820115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8433
  • Solanum tuberosum
  • SE3820115
  • Mutator
  • M30
  • chr03:29772270-29772752
  • ATTTATATT
  • TATATTGGGATAATACATATATTTGACCTTAAACTTGGCATCAAATTTTAACTTTGACCTCCAACTTTCATAGTGCACAAACAAGCACTTTAACTATCCAATCTTTTAATAAATAAACACGCG

Secondary structure and sequence

TSD    TIR
5'



3'
ATT    -T   G              T               A                              T          CAA                                       --   -   -  A  CAAGA  G   -   GCAAACGCTGCCACGTGTATTAGCGAGCCACTCAATGGCTGCCAACTAATTAAACACTTTACACGTCCATTTTAGAACTAAAAAAAAAAAA
   TATA  TGG ATAATACATATATT GACCTTAAACTTGGC TCAAATTTTAACTTTGACCTCCAACTTTCA AGTGCACAAA   GCACTTTAACTATCCAATCTTTTAATAAATAAACACGCG  ATT TTT GG GC     GC TGA AAT                                                                                           
   ||||  ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||||  ||| ||| || ||     || ||| |||                                                                                           A
   ATAT  ACC TATTATGTATATAA CTGGAATTTGAACCG AGTTTAAAATTGAAACTGGAGGTTGAAAGT TCACGTGTTT   TGTGAAATTGATAGGTTGGAAAATTATTTATTTGTGCGC  AGA TGG CC GT     TT TGC CAC                                                                                           
 TT    TT   G              C               A                              T          ATC                                       AC   A   A  -  -----  -   A   TACACGTGCGTAAAACGCGCTCACTCTTCATTAAAAACTCCGTGTGTTGTCACTTTTTTTACGACTTTACTGTTGAAATGGGAATTAATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End