SE3820120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8438
  • Solanum tuberosum
  • SE3820120
  • Mutator
  • M6
  • chr02:47450155-47450468
  • TATAAATTA
  • TAGGGAAAAAGGTCTGAAATATATCTGAACTTTGACCGAAATTGCTATAACAATCCCGAACTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAAT             C                     C          A                   AAAA     T      -   -                             A      AT           CATAAA    GCGTC
       TAGGGAAAAAGGT TGAAATATATCTGAACTTTGA CGAAATTGCT TAACAATCCCGAACTTTGG    GACCT TTACCC CTT CACTATTTAATAGTGTATTTTAAAGGTAT TATATG  CACGTGGACAT      TATT     
       ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||    ||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||  |||||||||||      ||||     A
       GTCCCTTTTTCCA ACTTTATATAGACTTGAAACT GCTTTAACGA ATTGTTAGGGTTTGAAATT    CTGGA AATGGG GGA GTGATAAATTATTACATAAAATTTCCATA ATATAC  GTGTACCTGTG      ATAA     
ATTAAAT             A                     A          C                   CGGC     T      T   C                             C      GG           -CAATG    ATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3