SE3830126

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8444
  • Solanum tuberosum
  • SE3830126
  • hAT
  • Hat19
  • chr03:33628628-33628764
  • CCTTTCCC
  • GTTGCGCGGACTCTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTTTCCCCTTA     G           CTTTT       C  ----C   C        T      ATAC
            GTTGC CGGACTCTTCA     GATGCCG AC     CGT TCGGATTC TCAAAA    
            ||||| |||||||||||     ||||||| ||     ||| |||||||| ||||||    A
            CAACG GCCTGAGAAGT     TTACGGT TG     GCA AGCCTAAG GGTTTT    
CCCTTTCCGATA     A           ---TT       -  CCCAC   C        C      CATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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