Plant MITE

SE3810131

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8449
Solanum tuberosum
SE3810131
Tc1/Mariner
St14
chr04:57804094-57804414
TA
TACTCCCTCCGTTCTTATT

Secondary structure and sequence

TSD TIR

5'

3'

         C   C     TATATAAAT        ATTA        TTTATGTCATTTAAAAAACTAGATAAGTTGACCATTTTATCCGCTTTCTTGAAGTCAAGTTTTTAATAAAGGAACATAAATAACTTTATTTTGATTAATTAAATTGACCAATGAACA
TACTCCCTC GTT TTATT         TATATGTC    TTTTAGAT                                                                                                                     
||||||||| ||| |||||         ||||||||    ||||||||                                                                                                                     T
ATGAGGGAG CAA GATAA         ATATACAG    GAGGAATT                                                                                                                     
         A   A     ---------        -CAA        ATAAACAGTAAAATGTTTTACTTACATATTTACTGTAATAAGAAGAATCAAATTGGAACTCTCAATAATCGGAACTATGATACTTAAACAGGTTGTATCTTTTTTTTTTTAATTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810131

TACTCCCTCCGTTCTTATTTATATAAATTATATGTCATTATTTTAGATTTTATGTCATTTAAAAAACTAGATAAGTTGACCATTTTATCCGCTTTCTTGAAGTCAAGTTTTTAATAAAGGAACATAAATAACTTTATTTTGATTAATTAAATTGACCAATGAACATGAATTAATTTTTTTTTTTCTATGTTGGACAAATTCATAGTATCAAGGCTAATAACTCTCAAGGTTAAACTAAGAAGAATAATGTCATTTATACATTCATTTTGTAAAATGACAAATATTAAGGAGAACGACATATAAATAGAAACAGAGGGAGTA

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