SE3820133

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8451
  • Solanum tuberosum
  • SE3820133
  • Mutator
  • M34
  • PGSC0003DMB000000836:13356-13554
  • GAAGTGAAG
  • GGGTAAAACTTATCCGCACCGGATGTATACACTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAGTGAAG   T                  A            TCC     ATGCATGCCATGTGTTTAAATTTATAGTTCATTTTGCCTAACCTTAAT
         GGG AAAACTTATCCGCACCGG TGTATACACTAA   AATAC                                                
         ||| |||||||||||||||||| ||||||||||||   |||||                                                 
         CCT TTTTGAATAGGCGTGGCC ACATATGTGGTT   ATTAC                                                
GAAGTGAAG   T                  C            -TG     ATTAAAGGTAATAATACACTAAATTACTTAATTTTGTGTACAATTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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