SE3810134

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8452
  • Solanum tuberosum
  • SE3810134
  • Tc1/Mariner
  • St8
  • chr08:143366-143694
  • TA
  • TACTCCCTCCGTCCACTATTGTTTGTCAGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                             -   ---TACTAAAAG     GTCCAAAATTAATTGTCAATTTAAACAATCAAAGAATAATTAGTCACTTTTTTCCAATTCTGCCCTTAATATTTACATAACTACTAGTTTCAAAAAGTAGCCATTTTAAAGTTACA
TACTCCCTCCGTCCACTATTGTTTGTCAG GTA            TAGTT                                                                                                                    
||||||||||||||||||||||||||||| |||            |||||                                                                                                                    A
ATGAGGGAGGCAGGTGATAACAAACAGTC CAT            TGGGA                                                                                                                    
                             T   TCTACTACGTGT     ATTCTTTTTAAATTATATTCCACGTTAAACTGATTATATTGGGATGATAGTTAGTAATAATTTTACCAAACATGAAACTTTTGATATTTGTGTTGAAAAAAGTGTAATTTCATCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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