SE3810137

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8455
  • Solanum tuberosum
  • SE3810137
  • Tc1/Mariner
  • St7
  • chr03:24410948-24411223
  • TA
  • TACTCCCTCTAGTCCATATTAAGTGAATTTTTGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                             T      ---TA     CACCTCTTTAGAAAAATATTTAAGGACTTAAATTAAATGCTACTTTCCACTATTATCCTTTTGATTATTCCAAAACTATTCTCCTAGAAAATA
TACTCCCTCTAGTCCATATTAAGTGAATT TTGGGG     TGGCA                                                                                             
||||||||||||||||||||||||||||| ||||||     |||||                                                                                             T
ATGAGGGAGATCAGGTATAGTTCACTTAA AACCCT     AAGTG                                                                                             
                             C      GAAAA     TCAAGTTTTATTCACTTAAAAAGTTTCAAGTTCTATTAATATCCCTGACAAAGGTATAAATGGAAAGGGAATTTACTCCAAGAATTGATCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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