SE3810138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8456
  • Solanum tuberosum
  • SE3810138
  • Tc1/Mariner
  • St8
  • chr01:91799737-91800334
  • TA
  • TACTCCCTCCGTCCACTATTGTTTGTCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                              -T      AAAATAGTTGTCCAAAATTAATTGTCAATTTAAACAATCAAGGATTAATTAGTTACTTTTTTCCAATTTTGCCCTTAATAATTACATAACTACTTTCAAAAAGTACTGATCATTTTAAAGTTACTATACTACTTAATGTGAGAAAGTTATTTTTACATTTTTCAAAAAGTACAAACCATTTTAAAGTAACAAAGAAAAACTTTTTAAGAAATTGCCCTTTAGTTAGCTTAAGTTACTCTATAAATTGGAAAGTTATTTAGG
TACTCCCTCCGTCCACTATTGTTTGTCAGG  ATACTA                                                                                                                                                                                                                                                                     
||||||||||||||||||||||||||||||  ||||||                                                                                                                                                                                                                                                                     T
ATGAGGGAGGCAGGTGATAACAAACAGTCC  TTCCAG                                                                                                                                                                                                                                                                     
                              TA      ACCGTGTTGGGAATTCTTTTTAACTTATATTCCACGTTAAACTGATTATATTGGGATGATAGTTAGTAATACTTTTAACCAGAAGTAATTATCAGATAACTTGATTTCTTATGGATCAGAATTTACATAAAAATGGCACGTTAAAATGTAAATTATGACAACAAACGATCCTCATAATTTACGTATTTCTGATTTCGTTAGTTTTCATTTGATTTCTTATGGTTTTCAGATGGGTATATAATATTTCTTATGGTTGCCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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