SE3810145

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8463
  • Solanum tuberosum
  • SE3810145
  • Tc1/Mariner
  • St10
  • chr03:45457661-45458085
  • TA
  • TACTCCCTCCGTTCCTTTTTATTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
              C       T   --C       - AG T -  ACTTGCATTAAGAAATTATGTAACTTTACCCTTCTACCCTTATTTCATGTTTTCTTAAGTCAACTTTTCAATAAATGATGAATATGCTAGTTTTCAAAAATTAAAATGCATTTGGATGACTATTTGAATTTTTGAGTTTATTTTCAAAATCAGATTTTATAGAATAGTGA
TACTCCCTCCGTTC TTTTTAT TGT   ACATTTT T  A T GC                                                                                                                                                                          
|||||||||||||| ||||||| |||   ||||||| |  | | ||                                                                                                                                                                          A
ATGAGGGAGGCAAG AAAAATA ACA   GGGAAGG T  A T TA                                                                                                                                                                          
              -       T   ATA       A -- - T  TCAATCTGGTATTATGAACAGTAAAGTATTTTAGTTACGTATTTAATGGTATAAGAAGGATAATATGGGAACTATTTCATCAATTAATCGGAACTTTTATATATGAAACTGGTTGGATCTTTTTGATTATTCATTAATATAAGTAACCTCATGAAGTTAATGAGAGAGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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