Plant MITE

SE3820146

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8464
Solanum tuberosum
SE3820146
Mutator
M6
chr04:45562873-45563190
TATAATTTT
GGGAAATAGGTCTGAAATATATCTGAACTTTGACTGAAACTGTTGTAACAATCTCAAACTTTGGTCAAGACCTATTACCCTCCAGCACTATTTAATAGTGTATTTTAAAGATATATAAGTGCCCAGCTGGACA

Secondary structure and sequence

TSD TIR

5'

3'

TATAATTTT      TA   C              A            --- -                        T  A            T   -                                 A       GC      AGTTATTAT       GTGC
         GGGAAA  GGT TGAAATATATCTGA CTTTGACTGAAA   C TGTTGTAACAATCTCAAACTTTGG CA GACCTATTACCC CCA GCACTATTTAATAGTGTATTTTAAAGATATATA GTGCCCA  TGGACA         TTATAAG    
         ||||||  ||| |||||||||||||| ||||||||||||   | |||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||  ||||||         |||||||     
         CCCTTT  CCA GCTTTATATAGACT GAAACTGGCTTT   G ACAACATTGTTAGGGTTTGAAACC GT CTGGATAATGGG GGT CGTGATAAATTATCACATAAAATTTCTATATAT CACGGGT  ACCTGT         AGTATTT    
TTTTAATAT      TC   A              -            AAC T                        T  C            -   A                                 C       GC      ---------       ATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820146

TATAATTTTGGGAAATAGGTCTGAAATATATCTGAACTTTGACTGAAACTGTTGTAACAATCTCAAACTTTGGTCAAGACCTATTACCCTCCAGCACTATTTAATAGTGTATTTTAAAGATATATAAGTGCCCAGCTGGACAAGTTATTATTTATAAGGTGCAATATTTATGATGTCCACGTGGGCACCTATATATCTTTAAAATACACTATTAAATAGTGCATGGGGGTAATAGGTCCTGTCCAAAGTTTGGGATTGTTACAACATGCAATTTCGGTCAAAGTCAGATATATTTCGAACCCTTTTCCCTATAATTTT

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