SE3830148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8466
  • Solanum tuberosum
  • SE3830148
  • hAT
  • Hat26
  • chr05:5377112-5377869
  • GTAAAATT
  • TTAGAGCCGTCAAAAAGGGCTTAGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAAAAT       C       A   ----        ATG   -        A CCAATCCGTTATTGGGGTAGGGTTGGGATAGGATTTTACAAGCCCGTTTAAAATCGGGGCTTATATGCCCAACCCTTTAAGGCCCTTAGCCCTTGAGGCTTGATCGGGGCTGGGCCGGGCCGGGGTCGGCCCATGGGCCAAATTATTTAATTTTAATTAAAATAAATATTAAAAAAACTAGAAATCCTAAATAAGTGTTTGTGGAGTTTTTCTAAGGAGCTTACCTCATGAATTTCTTTATTATTTAGTTTTGAATATAAGACTTGGATAGTAAACACTATTTATATTATATGTGATAGAATGTTTTATGGCTTGAACAATTAATTA
       TTAGAGC GTCAAAA GGG    CTTAGTCC   GGG CCGGCCCG C                                                                                                                                                                                                                                                                                                                                       
       ||||||| ||||||| |||    ||||||||   ||| |||||||| |                                                                                                                                                                                                                                                                                                                                       G
       GATCTCG CAGTTTT CCC    GGATCGGG   GGG CGGGTTCG G                                                                                                                                                                                                                                                                                                                                       
TTAAAAT       A       G   AGTT        -AT   G        - AGCGCCCGGTTTCTTAAACTACCCGACCTTGCCCGGACGGGAAGTAAAGTTTCCCAACATTTTACCAGTTGGGCCGGGTTGGGGTCTTCCCAGTTCCCGACCCCGCCTGGCTGGGAGAAAAAAAAATACAGTTTAGTTACAGTGTTTGTCATTGTAACAAAGTTATTAAGATTTATTTTAGATCGTTATTTATAAATTTCTTTTTTTTTTAGAGATTTCATTTATTATAGATTTTTTGTTTGATCATTTGATTTCTTGTGAAGACTGATTTTGAAATCAATCGTTATGTATTAATGAATTTCATAAAACAATTTACTTTAGTTCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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