SE3820149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8467
  • Solanum tuberosum
  • SE3820149
  • Mutator
  • M6
  • chr02:49797959-49798400
  • TTTTTAATA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTTA      T      T     TTT      CTTAATATTTGTTCTTTATGCTCGAAAGATGCATCTATGTCATTAATTAAAATAGGGATAAGGGTCTGAAAAATACCCCAACTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGATTATTTAATACCGTATTTTAAACATATATATTTGCCCAC
       ATAGAT TTTTTT AGTAT   GAATAG                                                                                                                                                                                    
       |||||| |||||| |||||   ||||||                                                                                                                                                                                     
       TCCCTA TTCCCA ACTTT   TTATGG                                                                                                                                                                                    
TAAAATT      -      T     ---      GGTTGAAACCAGCCTAAAAGACAACGCTATGATTTGAAAGTCTTCCTGGATAATGGAGGGATCTGATAAATTATGGCATAAAAAATGGGGGACTTGATAAATTATCACATAAAATTTCCATATATACACAGGTGCACCTGTGTAATGATAAATATTAAAACGTAATAAAAAATACAGGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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