SE3810150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8468
  • Solanum tuberosum
  • SE3810150
  • Tc1/Mariner
  • St5
  • chr09:15800022-15800272
  • TA
  • TACTCCCTCCGTTTCAATTTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
         C               ----TGTGG   TCACGTGACACAGAGTTTAAGAAAGTAAAGAAGACTTGTTTGAATCTTGTGGCGTTAAACTAAAATATGTTGAATGTACCAAAATGCTAT
TACTCCCTC GTTTCAATTTGTTTG         TTT                                                                                          
||||||||| |||||||||||||||         |||                                                                                          T
ATGAGGGAG CAAAGTTAAACAAAC         TGA                                                                                          
         A               TGAATGAAA   AAAATCACACAAAGTTTTTCTTACAGAGAAAAGAAAAAACCGTTGAGAAAAAGATTGAAAGGTGGACTGTACAAATTCTAGTATTCTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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