Plant MITE

SE3820152

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8470
Solanum tuberosum
SE3820152
Mutator
M38
PGSC0003DMB000000690:99097-99416
TAAAACATT
GAGTTAATGGTCAAATACTCACATGAACAATCACTTTTTCATGAGTTCCATACCTCAACTATCCATTGTTTGCTTTACCTACCTAAACTTATCACTCCTTTTGTATCTAAACACACCTCGATTTTGAGTTGGCCAAATGCTTGTTCCC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAACATT               T  T   A     A       T   A  A   C               C        C                T      C         CT        C     T           ---AAA        CC AA
         GAGTTAATGGTCAAA AC CAC TGAAC ATCACTT TTC TG GTT CATACCTCAACTATC ATTGTTTG TTTACCTACCTAAACT ATCACT CTTTTGTAT  AAACACAC TCGAT TTGAGTTGGCC      TGCTTGTT  C  
         ||||||||||||||| || ||| ||||| ||||||| ||| || ||| ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||| |||||||||||      ||||||||  |   
         CTCAATTACCAGTTT TG GTG ATTTG TAGTGGA AAG GT CAA GTATGGAGTTGATAG TAACAAGT AAATGGATGGGTTTGA TAGTGA GGAAACATA  TTTGTGTG AGCTA GACTCAACCGG      GCGGACAA  G  
TTACAAAAT               T  T   G     A       T   C  A   A               A        T                -      A         AT        A     C           ATGTAC        CA CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820152

TAAAACATTGAGTTAATGGTCAAATACTCACATGAACAATCACTTTTTCATGAGTTCCATACCTCAACTATCCATTGTTTGCTTTACCTACCTAAACTTATCACTCCTTTTGTATCTAAACACACCTCGATTTTGAGTTGGCCAAATGCTTGTTCCCAATCGACAACAGGCGCATGTAGGCCAACTCAGCATCGAAGTGTGTTTTAATACAAAGGAAGTGATAGTTTGGGTAGGTAAATTGAACAATAGATAGTTGAGGTATGAAACATGCGAATAGGTGATAGTTTAGGTGTGTTTTTGACCATTAACTCTAAAACATT

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