SE3830153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8471
  • Solanum tuberosum
  • SE3830153
  • hAT
  • Hat18
  • PGSC0003DMB000000815:73483-74013
  • CTTGTAAT
  • TTGTAATTAGGGATGGCAATGGGGTGGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
C      T                             GAT  GGGGCGGGTTGAAGTGGGTATTTTAAAAATTAATGTGGGGTGGAGCGGGTTGTGGGTATATGTGATTTTATGTGGGTTCAAACTTAATTTTAACTTTTTACATGTTACAAGAGTGATAGAGCATTATTTATTAAGATAATTTCATTAAAGCTACTAAAATATTCAAGATAATAAATGAAAATAGTTCAATAAAAATAATACAATTTCTTACATGTTTCCCAATTG
 TTGTAA TAGGGATGGCAATGGGGTGGGGCGGGTTG   GC                                                                                                                                                                                                                                 
 |||||| |||||||||||||||||||||||||||||   ||                                                                                                                                                                                                                                  
 AATGTT ATCCCTACCGTTATCCCGCCCCGCCCCGC   CC                                                                                                                                                                                                                                 
T      C                             ---  CGCCACGCCCAACTCGAATTGGGCGTTTTTTAAATTAGGCGGGGCGGGGCGTATTGTTGAGAAAAGTAAAAGTTGGGCGGGATGGGGCGGGGCGTATTAAAAAATTATTAAAAAAAAGATCAATACAAACTATGATTTTTATTTTAAGTATTTTTATTTAAGTAAAAAAGTAATTCAACATAATTAAATTATCCTATCACTGAATTTTAAAATTAAAAATCTCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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