SE3820154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8472
  • Solanum tuberosum
  • SE3820154
  • Mutator
  • M8
  • chr01:3701740-3702075
  • TATTGCAAA
  • TTGCAAAGGCATAATA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -          ATTAATATGTG         C A                 T A  T     C   CC       CA                 C                    C    A  G    ------------               TAATACACATAG    C
  TTGCAA AGGCATAATA           ATAAATATG C TTTAACTTGGTTTCAGC G CA TTATG CCT  AACTTTG  TGTGCACAAGTAGGCAC TAAACTTGTATAAAATTGAA AAGT GA ACAT            GTGTCCTACGTGACA            GACG 
  |||||| ||||||||||           ||||||||| | ||||||||||||||||| | || ||||| |||  |||||||  ||||||||||||||||| |||||||||||||||||||| |||| || ||||            |||||||||||||||            |||| C
  AACGTT TCCGTATTAT           TATTTGTAC G GAATTGAACCGAAGTTG C GT GATAC GGA  TTGAAAC  ACACGTGTTCATTTGTG ATTTGAACATATTTTAACTT TTTA TT TGTA            CGCAGGATGTACTGT            TTGC 
 A      A          ----------G         T A                 T C  T     T   AA       CC                 A                    C    C  G    AGCAGTATGTAC               -TAAAACACTGG    A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End