SE3810155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8473
  • Solanum tuberosum
  • SE3810155
  • Tc1/Mariner
  • St16
  • chr06:47813732-47813965
  • TA
  • TACTCCCTCCGTCCCATTTTATGTGGCACCCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                          C  CC   CCTT   A     TCCCAAA   AATGTCACCTTACTATAATTAGAAACAATTTAACTTTAAAATACCCTTAATGAAATGATTTT
TACTCCCTCCGTCCCATTTTATGTGG AC  TTT    TTT GTACG       AAG                                                              
|||||||||||||||||||||||||| ||  |||    ||| |||||       |||                                                               
ATGAGGGAGGCAGGGTAAAATACACC TG  AAA    GAA CGTGC       ATT                                                              
                          C  AC   --CT   C     --CACAA   CTTAATTTCCTTCTGAAAACTTTAAACACCAGATTTAGTTAAGAATCTATAAACATTCCAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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