Plant MITE

SE3820163

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8481
Solanum tuberosum
SE3820163
Mutator
M8
chr09:48665589-48665904
AAGATTATA
GGCATAATATATAAATATGACCCTTAATTTGACTTTAGCGGATAACTATGCCCTTCAACTTTGAGTATGCAGAAGTAAACACTTAAACTTGTATAAAGTTGAACAAGTAGATACA

Secondary structure and sequence

TSD TIR

5'

3'

AAGATTATA                     C           -   AG   A   C    C    C       A  A    G     A       ---                              CATA  -  ---  A  ACATAATACACGTAGAACG
         GGCATAATATATAAATATGAC CTTAATTTGAC TTT  CGG TAA TATG CCTT AACTTTG GT TGCA AAGTA ACACTTA   AACTTGTATAAAGTTGAACAAGTAGATACA    TT CT   AC TG                   
         ||||||||||||||||||||| ||||||||||| |||  ||| ||| |||| |||| ||||||| || |||| ||||| |||||||   ||||||||||||||||||||||||||||||    || ||   || ||                   C
         CCGTATTATATATTTATATTG GAATTGAACTG AAG  GTC GTT ATAC GGAA TTGAAAC CA ACGT TTCAT TGTGAAT   TTGAACATATTTTAACTTGTTTATCTGTGT    GC GG   TA CT                   
ATATTAGAA                     A           C   CA   -   A    T    -       C  C    G     C       ATT                              --AA  A  ATT  -  GTTAAAACACAGTACACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820163

AAGATTATAGGCATAATATATAAATATGACCCTTAATTTGACTTTAGCGGATAACTATGCCCTTCAACTTTGAGTATGCAGAAGTAAACACTTAAACTTGTATAAAGTTGAACAAGTAGATACACATATTCTACATGACATAATACACGTAGAACGCCACACATGACACAAAATTGTCATTTAGGACGAATGTGTCTATTTGTTCAATTTTATACAAGTTTTATAAGTGTCTACTTGTGCACACCCAAAGTTAAGGTCATAATTGCTGACGAACGTCAAGTTAAGAGTTATATTTATATATTATGCCAAGATTATA

Copy Cancel