Plant MITE

SE3810164

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8482
Solanum tuberosum
SE3810164
Tc1/Mariner
St3
chr11:5693550-5693815
TA
TACTCCCTCTGTCCAACAATACTTGTCCA

Secondary structure and sequence

TSD TIR

5'

3'

        C            C       CTAT   C     ACACTTCTTAAGAAACTATAAATAGAAGAGTAATTTTACTATATCACCCTTTGAATACAATAAATACAATGTTTTGAAAAATGTAATAGAGA
TACTCCCT TGTCCAACAATA TTGTCCA    TGA TTTGC                                                                                            
|||||||| |||||||||||| |||||||    ||| |||||                                                                                            A
ATGAGGGA ACAGGTTGTTAT AACAGGT    TAT GATAA                                                                                            
        A            C       --AA   -     AACCCTACAGATTGTTATAACAAGTGAAATACTTAAGTTACCTACTAAAATGTGAACCAAGGATTAAATGGGAATAGTAATTAATATCATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810164

TACTCCCTCTGTCCAACAATACTTGTCCACTATTGACTTTGCACACTTCTTAAGAAACTATAAATAGAAGAGTAATTTTACTATATCACCCTTTGAATACAATAAATACAATGTTTTGAAAAATGTAATAGAGAAATTACTATAATTAATGATAAGGGTAAATTAGGAACCAAGTGTAAAATCATCCATTGAATTCATAAAGTGAACAATATTGTTAGACATCCCAAAATAGTATAATGGACAACTATTGTTGGACAAAGGGAGTA

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