Plant MITE

SE3810165

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8483
Solanum tuberosum
SE3810165
Tc1/Mariner
St5
chr08:5384874-5385128
TA
TACTCCCTCCGTTTCAAAAAGAATGACC

Secondary structure and sequence

TSD TIR

5'

3'

         C    C             --CA    -     GGAACGGAGTTTAAGAAAATAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTAA
TACTCCCTC GTTT AAAAAGAATGACC    ATTT GACTT                                                                                       
||||||||| |||| |||||||||||||    |||| |||||                                                                                        
ATGAGGGAG CAAA TTTTTTTTACTGG    AAGG AAAAT                                                                                       
         A    T             ATCA    A     CAGACAAATTTTCTCTTACTGGGGGAAAAGAAAAAAACCGTTGTGAAATTGAAATTGAAAGGTGCACTGTACAAATTCCGGTGTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810165

TACTCCCTCCGTTTCAAAAAGAATGACCCAATTTGACTTGGAACGGAGTTTAAGAAAATAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTAATTTTGTGGCCTTAAACATGTCACGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAAGAAAAGGGGGTCATTCTCTTTTAAACAGACTAAAAAGGAAACTAGGTCATTTTTTTTTAAACAGAGGGAGTA

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