SE3830179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8497
  • Solanum tuberosum
  • SE3830179
  • hAT
  • Hat19
  • chr03:36624295-36624431
  • GGTAGGAG
  • CTATGTTGCTCGGACTCTTCAAAAATGTCAAGGGGTGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGGTGCGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTAGGAG   T     T           ---AAA     AAG G  G            G         G
        CTA GTTGC CGGACTCTTCA      ATGTC   G GT CGTGTCGGATTC CCAAAAGTA 
        ||| ||||| |||||||||||      |||||   | || |||||||||||| ||||||||| T
        GAT CAACG GCCTGAGAAGT      TACGG   C TG GCACAGCCTAAG GGTTTTTAT 
GAGGATGG   T     C           GAAAGC     --- G  G            A         G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3