SE3830183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8501
  • Solanum tuberosum
  • SE3830183
  • hAT
  • Hat28
  • chr07:45415473-45415676
  • GTTAGGCC
  • GGCCCAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTA    ----              CA         GGGGTGTCGACCGACACCCCTTCGTCGAAAAATTACATTGTGTAGCTAGAATTAAAAATATTTTTTTAT
    GGCC    CAGTGGCGGAGCCA  TGAAGTTGA                                                                     
    ||||    ||||||||||||||  |||||||||                                                                      
    CCGG    GTTACTGCCTCGGT  TGAAACTGT                                                                     
        ATTG              TT         TTCCCCACAGTTTTATATTTCTTCATTTTAGCGCACTTCAGTTCCTCACAGTTATACATTATATATATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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