Plant MITE

SE3810186

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8504
Solanum tuberosum
SE3810186
Tc1/Mariner
St5
chr06:17019735-17019986
TA
TACTCCCTCCGTTTCAATTTGTTTGGC

Secondary structure and sequence

TSD TIR

5'

3'

              C        ---------------    -TTC     C     ---A TCTATTTCAAAAAGAAAGTCTCTTTCCTCTTTTGGCAACTCTTTAATTTCAACTTTCCACATGACATATTTAAG
TACTCCCTCCGTTT AATTTGTT               TGGC    CTTTC TTTTT    G                                                                          
|||||||||||||| ||||||||               ||||    ||||| |||||    |                                                                           
ATGAGGGAGGTAAA TTAAACAA               ACCG    TTAAA TTCTT    T                                                                          
              A        ATAAATCAAAACTGA    CATC     -     TCAT TCTTCTGAAAACTTAGAACACGAGAATTTGATTTCTATACATCTTACATGGTTTTATAGGAAATTAGAAAACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810186

TACTCCCTCCGTTTCAATTTGTTTGGCTTCCTTTCCTTTTTAGTCTATTTCAAAAAGAAAGTCTCTTTCCTCTTTTGGCAACTCTTTAATTTCAACTTTCCACATGACATATTTAAGACCAAAAGATTAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGAGCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTCTACGCCAAGTCAAAACTAAATAAACAAATTAAAATGGAGGGAGTA

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