Plant MITE

SE3820188

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8506
Solanum tuberosum
SE3820188
Mutator
M8
chr02:41606707-41607031
TAAATTAAT
ATTAATGGCATAATACATAAATATACCCTTTAACTTTGCCTCATTTTATATTTATGTCCTTCAACTTTGAGTGTACATAAATAGACACTTAAACGTGTATAAAATTGAACAAATAGACACATATGTCCTATGTGGCATCCTAC

Secondary structure and sequence

TSD TIR

5'

3'

TAA      ---             A    A           TGC                 T       -     A    A                   G        A        A         AT              CC   ATGA  ATTT     CTA
   ATTAAT   GGCATAATACATA ATAT CCCTTTAACTT   CTCATTTTATATTTATG CCTTCAA CTTTG GTGT CATAAATAGACACTTAAAC TGTATAAA TTGAACAA TAGACACAT  GTCCTATGTGGCAT  TAC    CA    GCATC   
   ||||||   ||||||||||||| |||| |||||||||||   ||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||| |||||||| |||||||| |||||||||  ||||||||||||||  |||    ||    |||||    
   TAATTA   CCGTATTATGTAT TATA GGGAAATTGAA   GAGTAAAATGTAAATAT GGGAGTT GAAAC CATA GTGTTTATCTGTGAATTTG ACATATTT AACTTGTT ATCTGTGTA  CAGGATACACCGTG  ATG    GT    TGTGG   
         AAT             A    C           CTA                 -       T     C    C                   A        C        C         AT              TT   ---A  ATCC     TAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820188

TAAATTAATGGCATAATACATAAATATACCCTTTAACTTTGCCTCATTTTATATTTATGTCCTTCAACTTTGAGTGTACATAAATAGACACTTAAACGTGTATAAAATTGAACAAATAGACACATATGTCCTATGTGGCATCCTACATGACAATTTGCATCCTACATGGTGTCCTATGAGTATTGTGCCACATAGGACTAATGTGTCTACTTGTTCAACTTTATACAAGTTTAAGTGTCTATTTGTGCATACCCAAAGTTTGAGGGTATAAATGTAAAATGAGATCAAGTTAAAGGGCATATATATGTATTATGCCTAAATTAAT

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