Plant MITE

SE3820189

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8507
Solanum tuberosum
SE3820189
Mutator
M8
chr05:20331497-20331809
TTTAAAATG
TTTAAAATGGCATAATACATAAATATGCCATTTAACTTGGCCTCATTTCACATTTATGCCCTCCAACTTTGGGTGTGCACAAGTAGATACTTAAACTTGTATAAAATTGAACAAATAG

Secondary structure and sequence

TSD TIR

5'

3'

         T           -        C                    C        G                     C      A                 A             --------      - CG   TACATGGAAATTTGTGTCCTGT
  TTTAAAA GGCATAATACA TAAATATG CATTTAACTTGGCCTCATTT ACATTTAT CCCTCCAACTTTGGGTGTGCA AAGTAG TACTTAAACTTGTATAA ATTGAACAAATAG        ACACAA A  TCC                      
  ||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||        |||||| |  |||                       
  AAATTTT CCGTATTATGT ATTTATAT GTAAATTGAATTGGAGTAAA TGTAAATA GGGAGGTTGAAGCTCACACGT TTTATC GTGAATTTGAACATATT TAACTTGTTTATC        CGGGAT C  ACA                      
TA       -           T        A                    A        A                     A      C                 G             TTTGTGCT      A --   GTGTTATGTGCATCCTGTGGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820189

TTTAAAATGGCATAATACATAAATATGCCATTTAACTTGGCCTCATTTCACATTTATGCCCTCCAACTTTGGGTGTGCACAAGTAGATACTTAAACTTGTATAAAATTGAACAAATAGACACAAACGTCCTACATGGAAATTTGTGTCCTGTGTGGTGTCCTACGTGTATTGTGACACATAGGGCTCGTGTTTCTATTTGTTCAATGTTATACAAGTTTAAGTGCCTATTTATGCACACTCGAAGTTGGAGGGAATAAATGTAAAATGAGGTTAAGTTAAATGATATATTTATTGTATTATGCCTTTTAAAAT

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