SE3820190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8508
  • Solanum tuberosum
  • SE3820190
  • Mutator
  • M24
  • chr11:18738291-18738935
  • TTAAATTTT
  • AAATTTTGGGAAAAGGGTCAAAAATGCCCTTATACTATGTGAAAGGAACAAATATGCCCTCCGTTTATAGTTTGGCTCAAAAATGCCCTTATCGTCAATACTTTGGCTCAAAAATGCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TT      -T                         T                   T                              T                      C             -  CA    --       -  TCCAGAAATGCCCCTATAGTTAAAAAATGGGTCAAAAATGCCCTTTTCTGAATAAATATATTGTTTCTTTTCTTTTTAAACACATATTTTCCTTATTAAAATATTATTAAAGAACACTATTCTTGTTTTCTTTCTTTTAAAATCACTTTAACAAATAAAAGTGTAGGAAATATTTTTTTTCT
  AAATTT  GGGAAAAGGGTCAAAAATGCCCTTA ACTATGTGAAAGGAACAAA ATGCCCTCCGTTTATAGTTTGGCTCAAAAA GCCCTTATCGTCAATACTTTGG TCAAAAATGCCCT TG  GTCA  ATACTTT GG                                                                                                                                                                                      
  ||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||  ||||  ||||||| ||                                                                                                                                                                                      T
  TTTAAA  CCCTTTTCCCAGTTTTTACGGGAAT TGATACACTTTCCTTGTTT TACGGGAGGCAAATATCAAACCGAGTTTTT CGGGAATGGTAGTTATGAAACC AGTTTTTACGGGA TT  TGAT  GCTTTCC TG                                                                                                                                                                                      
 T      TT                         T                   T                              C                      A             A  --    AC       T  TTTTTACGGGAGGCAAACATCAAACCAGGTTTTTACAGGAACAGCAGTTATGAAACCAGGTTTTTATGGGAATAACAATAAATTAACCAGTCTGAGTCAAAGGTTTATTTATATAATAATAAAAGAAAAACAGTTTTCCCATGTACTTCAATAAGATAAAATTAACTATTTTACTCTAATTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End