SE3850197

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8515
  • Solanum tuberosum
  • SE3850197
  • PIF/harbinger
  • To6
  • chr05:4322742-4323167
  • TAA
  • AGGGGTCGTTTGGTGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              G   -----------------    - A  ACCAAATAGTCCCGGGATTAAATTATAGTACCGCTTATTTTGTTGTTTGGTTGGCAAGTTCGGGATAACTTATCCCGGGATTAATAATTAGTACCGGGATAAGTTATCCCTAACCTAGGGTGGTATAGTAATCCCGGGATAACTTATCCCGGGATAAATAGGTAAATGACAAAAAT
  AGGGGTCGTTTGGT TGA                 GGGA T AT                                                                                                                                                                                
  |||||||||||||| |||                 |||| | ||                                                                                                                                                                                G
  TCCCCAGCAAACCA ACT                 TATT A AT                                                                                                                                                                                
AA              A   TTTACTCAATACTACCC    C -  ACAACCCTATTCAATACAACCCTAATCAATACTACCCTATTCAACACAACCCTAATAAAAAATAACTCACAAACCAAACAACATAAGTTTTATTATTTAAAATTCTTGTTAAATAAACAAATGTTTTTACGGGAAGTAATTACATTTTTCACTATATTGTTTTCCCAACTTTCTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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