Plant MITE

SE3850198

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8516
Solanum tuberosum
SE3850198
PIF/harbinger
To7
chr11:7805232-7805467
TTA
AGGGGTCGTTTGGTTGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TT              ---T    ----------ACA    -     AGATTAATTATCCTGAGATTAGCTATCTTGGGATAAGTTATCCCACCATATATATGGGATAACTTATCCCATCACTAT
  AGGGGTCGTTTGGT    GGGA             AGTT ATCCA                                                                              
  ||||||||||||||    ||||             |||| |||||                                                                               
  TCCCCAGCAAACCA    CCCT             AGGA CCTAT                                                                              
AT              CACT    ATTTTTATTTATC    C     TTTTTTTATAAGGTTCCTATTTTAAACCACAGAACAAACCAAAGGTTCAAACCCTATTCAATAGGGTGGTAAATATGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850198

TTAGGGGTCGTTTGGTTGGGAACAAGTTATCCAAGATTAATTATCCTGAGATTAGCTATCTTGGGATAAGTTATCCCACCATATATATGGGATAACTTATCCCATCACTATGGTATAAATGGTGGGATAACTTATCCCAAACTTGGAAACCAAACAAGACACCAAATTTTATCCTTGGAATATTTTTTTTATCCCAGGACTATTTATTTTTATCCCTCACACCAAACGACCCCTTA

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