Plant MITE

SE3810200

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8518
Solanum tuberosum
SE3810200
Tc1/Mariner
St16
chr01:86135813-86136055
TA
TACTCCCTCCGTCCCATTTTATGTGGCACC

Secondary structure and sequence

TSD TIR

5'

3'

                              CTTTC    -  A TCCATCCCAAAAAGAATGTCACCTTACTATAATTAGAAACAATTTAACTTAAAATACCTCGTTTATCCTTAATGAAATGAT
TACTCCCTCCGTCCCATTTTATGTGGCACC     CTTT TT G                                                                                 
||||||||||||||||||||||||||||||     |||| || |                                                                                  
ATGAGGGAGGTAGGGTAAAATACACCGTGG     TAAA TG A                                                                                 
                              -----    C  - ACCGTACCACAAATTCTTTTTTTACTTCTGAAAACCTTGAACACCAGATTTTGTTTAAGAATCTATAAACACACCAACTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810200

TACTCCCTCCGTCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCATCCCAAAAAGAATGTCACCTTACTATAATTAGAAACAATTTAACTTAAAATACCTCGTTTATCCTTAATGAAATGATTTTCAACCACACAAATATCTAAGAATTTGTTTTAGACCACAAGTTCCAAAAGTCTTCATTTTTTTCTTAAACACCATGCCAAGTCAAATGGTGCCACATAAAATGGGATGGAGGGAGTA

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