SE3850203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8521
  • Solanum tuberosum
  • SE3850203
  • PIF/harbinger
  • To5
  • chr02:41531883-41532325
  • TTA
  • AGGGGTCGTTTGGTAGAGTGTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                         AAATAATACCCAATAGAGT   TT                      CT       --  T       ------  TTATTTCTTATGCATTGTTTGGTTTGGTGTATTAAAAATAGTATGCATTGTATAAGAATTTTTATTTACAAAAGTATCCTTCACAATTATGGTGGAAAAGATGTAAAAGTACTTTTGAGGGGTAATTGGGTCTT
  AGGGGTCGTTTGGTAGAGTGTATAA                   GTA  AGTAATGCATGTATTAATTATA  TGCATTA  GT ATGCATA      GA                                                                                                                                      
  |||||||||||||||||||||||||                   |||  ||||||||||||||||||||||  |||||||  || |||||||      ||                                                                                                                                      T
  TCCCCAGCAAACCATCTCACATATT                   CGT  TTATTACGTACGTAATTAATAT  ACATAAT  TT AGGGAAC      CG                                                                                                                                      
AT                         -------------------   TT                      --       CA  -       AAACCA  TAAAAAAGTACGATACATATTGATTACGAACGTAATCAATATGTGAGATAACACATAACTCCTCACATAATGATTATGGTACCTAAAGATCCATAATCATTACGTTTCCTAAATTATGTACGTAATTATACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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