SE3830204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8522
  • Solanum tuberosum
  • SE3830204
  • hAT
  • Hat15
  • chr12:61102963-61103413
  • CTCGCAGT
  • GCAGTCAGAGGCGAATCTAGAATTTCAAGAAGACGGGTGCAC

Secondary structure and sequence

TSD    TIR
5'



3'
CTC  -  T   A       C   AA  TCA      C    G   CATTGTC    GCGGCTCTGTCCCTTTAAGAAAAAAGGCAACTAATTTAGGCTTTCAAATTTGAGGGGCCTTATTTATTTTAGCAATAATAAGTATAGGTTTTTCATAAGAAAAATATTAAATACATTTGCAAAATAAATAAATTTTATTATAAAAAAAGTCATTAGAAGAAGTTTAAAAAAGG
   GC AG CAG GGCGAAT TAG  TT   AGAAGA GGGT CAC       AGGG                                                                                                                                                                             
   || || ||| ||||||| |||  ||   |||||| |||| |||       ||||                                                                                                                                                                             C
   CG TC GTC CCGCTTA ATC  AA   TTTTTT CCCA GTG       TTGG                                                                                                                                                                             
TGA  C  -   C       A   CG  ---      A    -   ----AAC    GCACCAGTAGGCTGTTTTGAGCTACATAATGTACATATTAAAAATTTTATACAGTTTATCGTTGACTTACTTGGGTACTTGTGTTTGTTGACCTACCAAGTAACCAAACTCACAGTCAAAAGGTGAAACTCCAACTCCCTAGCTAAGGGTCTACGACGTAAAATAAAATAAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End