SE3820205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8523
  • Solanum tuberosum
  • SE3820205
  • Mutator
  • M8
  • PGSC0003DMB000001060:17520-17845
  • TACTTTTTG
  • TGGGCATAATACATAAATGTGCCCTTTAACTTGGCCTCATTTTACGTTTATGTCCTTCAATTTTGGGTATGCACAAGTAGACATTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTT                                   C   TT         T             G   A                    CTTG                         GA   C           A       ------AGG  A  AT
       TGGGCATAATACATAAATGTGCCCTTTAACTTGGC TCA  TTACGTTTA GTCCTTCAATTTT GGT TGCACAAGTAGACATTTAAA    TATAAAGTTGAACAAGTAGATACAT  GTC TACATGGCATT TACATGT         AT CC  
       ||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||||||||| ||| ||||||||||||||||||||    |||||||||||||||||||||||||  ||| ||||||||||| |||||||         || ||  G
       ATCCGTATTATGTATTTATACGGGAAATTGAACCG AGT  AGTGTAAAT CGGGAAGTTGAAA CCA ACGTGTTTATCTGTGAATTT    ATATTTCAACTTGTTTATCTGTGTG  CAG ATGTACCGTAG ATGTACA         TA GG  
GTTTTTC                                   A   TT         C             G   C                    ATAA                         AA   A           G       GTAAAAAAA  -  AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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