Plant MITE

SE3830206

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8524
Solanum tuberosum
SE3830206
hAT
Hat24
chr12:61571979-61572660
CCCACAAC
GGGGTGTGC

Secondary structure and sequence

TSD TIR

5'

3'

CCCACAACTT         ATCGG       -- G    A      AT -  -    A    TCGGTTTTCGGTTTTTTTAAATATGTTAAACCAATAACCAAACCAATAAGATATTTTTTATCGGTTTTTGGTTTATCAGTTTTGGTCCTTAACGATTCGGTTTCCGGTTTAACCAATAAGAAAATACTTATAAAATAAATATATGACTTTTCTAATAAATTTGATGCGAAAACCCAATAATGTAACTTTACAAATGCTCATAAAATAGAAACAATTATAACAAACATGAAACGAACTATACAAGTGCAACACAAAGAGAAATTAAGAAGAATAGGGTTCATACTT
          GGGGTGTGC     TCGGTTC  G TTTT TGTATT  T GG TTCG TTTA                                                                                                                                                                                                                                                                                             
          |||||||||     |||||||  | |||| ||||||  | || |||| ||||                                                                                                                                                                                                                                                                                             T
          CCCCACACG     TTTTTGG  T GGCT GGCTAT  T GG TTGG TATT                                                                                                                                                                                                                                                                                             
CAACACCCAT         -----       CT -    -      -- T  C    C    TTCACAATAACCAAATAACAATAACCCCGTAACCCAATTGTTCAAAAATTACCAAAATATTTTTTTTAATAACCCAATAGCCAAGCCATAACCAAAAATTATAACCAAATAACCCATTTGACTATTGGGTAATTCTGATCATTAAATGATGAAAATGAACCATGAATTTATAATATATAATTAGAGTTATAGAATGATCAATGATAGAAACAGGAAATCGGAAGTTAAGTGAGAAGTGTTACTGAAACTCAAGTGTTAAAGTGTAATATGTTTTTCAATTTTAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830206

CCCACAACTTGGGGTGTGCATCGGTCGGTTCGGTTTTATGTATTATTGGTTCGATTTATCGGTTTTCGGTTTTTTTAAATATGTTAAACCAATAACCAAACCAATAAGATATTTTTTATCGGTTTTTGGTTTATCAGTTTTGGTCCTTAACGATTCGGTTTCCGGTTTAACCAATAAGAAAATACTTATAAAATAAATATATGACTTTTCTAATAAATTTGATGCGAAAACCCAATAATGTAACTTTACAAATGCTCATAAAATAGAAACAATTATAACAAACATGAAACGAACTATACAAGTGCAACACAAAGAGAAATTAAGAAGAATAGGGTTCATACTTTAGATTTTAACTTTTTGTATAATGTGAAATTGTGAACTCAAAGTCATTGTGAAGAGTGAATTGAAGGCTAAAGGACAAAGATAGTAACTAGTAAGATATTGAGATTAATATATAATATTTAAGTACCAAGTAAAAGTAGTAAATTACTAGTCTTAATGGGTTATCAGTTTACCCAATAAACCAATATTAAAAACCAATACCGAACCGATAACCCAATAATTTTTTTTATAAAACCATTAAAAACTTGTTAACCCAATGCCCCAATAACAATAAACCAATAACACTTTTATCGGTTCGGTTTATCGGTCGGTTCGGTTTTTGCACACCCCTACCCACAAC

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