SE3810209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8527
  • Solanum tuberosum
  • SE3810209
  • Tc1/Mariner
  • St3
  • chr09:41179968-41180237
  • TA
  • TACTCCCTCCGTCCAACAATAATTGTCCATTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
         C           A    C      ATTAT           CAACAATATTTTTTCACTTTATGAAATTAATGGATTATTTTACACTTAGTTTCTAATTTACCCATATCATTAATTATAGTCATTTTC
TACTCCCTC GTCCAACAATA TTGT CATTAT     TTTGAGATGTT                                                                                       
||||||||| ||||||||||| |||| ||||||     |||||||||||                                                                                        
ATGAGGGAG CAGGTTGTTAT AACA GTAATA     AAACTGTGTGG                                                                                       
         A           C    A      --CCT           AGAATTATGCTTTGATATTTATCTTCCTATTAAAATGATATAGTGGGAAACTTATATTATTTATGTTACATAACTTTTTACATTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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