SE3820210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8528
  • Solanum tuberosum
  • SE3820210
  • Mutator
  • M8
  • PGSC0003DMB000000814:57691-58014
  • TTATATATA
  • TATATATAGACATAATACATAAATATGCCCTTTAACTTTACCTCATTTTATATTTATGTCCTCCAACTTTGAGTGTGCACAAGTAGACACTTAAATTTGTATAAAATTGAACAAATAGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
T        - A           A             C  TA                       C       A     C                           A        A      CACAT     ATA      CC    ----     AT      C
 TATATATA G CATAATACATA ATATGCCCTTTAA TT  CCTCATTTTATATTTATGTCCTC AACTTTG GTGTG ACAAGTAGACACTTAAATTTGTATAAA TTGAACAA TAGACA     GTCCT   TGGCAT  TACA    TGACA  TTGCGT 
 |||||||| | ||||||||||| ||||||||||||| ||  ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||     |||||   ||||||  ||||    |||||  |||||| C
 ATATATAT C GTATTATGTAT TATACGGGAAATT AA  GGAGTAAAGTGTAAATATGGGAG TTGAAAC CACAC TGTTTATCTGTGAATTTGAACATATTT AACTTGTT ATCTGT     CAGGA   ACCGTG  ATGT    ACTGT  GGTGCA 
         T C           A             A  CC                       T       C     T                           C        C      ATAAT     -AC      TT    GTAT     --      T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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