SE3820214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8532
  • Solanum tuberosum
  • SE3820214
  • Mutator
  • M30
  • chr03:29772270-29772752
  • AATATAAAT
  • TGGCATAATACATATATTGGACCTTAAACTTGGCTTCAAATTTTAACTTTGACCTCCAACTTTCAAAGTGCACAAATAGACACTTTAACTATCCAACCTTTTAATAAATAAACACGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATATAAA   C              G               T                              A             A                C                     TG       TG     ----- C     ATGTGCACGCATTTTGCGCGAGTGAGAAGTAATTTTTGAGGCACACAACAGTGAAAAAAATGCTGAAATGACAACTTTACCCTTAATTAATT
        TGG ATAATACATATATT GACCTTAAACTTGGC TCAAATTTTAACTTTGACCTCCAACTTTCA AGTGCACAAATAG CACTTTAACTATCCAA CTTTTAATAAATAAACACGCG  TCTTACC  GCAAA     A GTGTG                                                                                            
        ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||  |||||||  |||||     | |||||                                                                                             
        ACC TATTATGTATATAA CTGGAATTTGAACCG AGTTTAAAATTGAAACTGGAGGTTGAAAGT TCACGTGTTTGTT GTGAAATTGATAGGTT GAAAATTATTTATTTGTGCGC  TAAAAAC  TCGGT     C ACTTT                                                                                            
TAAATATA   C              A               T                              A             C                A                     --       -C     TCTCG -     ACGTTTGCGACGGTGCACATAATCGCTCGGTGAGTTACCGACGGTTGATTAATTTGTGAAATGTGCAGGTAAAATCTTGATTTTTTTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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