Plant MITE

SE3830218

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8536
Solanum tuberosum
SE3830218
hAT
Hat31
chr03:27324249-27324942
CTTATGCA
TGCACAGTGGCGGATC

Secondary structure and sequence

TSD TIR

5'

3'

CTTA    ----   T        CAG      AAGA -  ---- GGG    C  TTTTTAATATAAATGTATAATTATTTTAATTATCGTGAAAATAAAAGGCTTATTATTAGAAATAAGACTTTTAGTCATAAGTTACCAAGCAAACTATGATTAATATAAATTATTTATTTTTAAAAAAAAGCTTCTAGTAGTACGATTCTCGACGAACTTTCATATTTTGAAGATATTGAATAATTGTATCATATCATTGCATGTTGAAAACTACAAATATTTATACTCTGGAGTTTTTAAAAACTTAAGTATTTTGTTGTAATAAATGAGATATAGGAAATTCAAAAAGTGAAAAAATAAACT
    TGCA    CAG GGCGGATC   GATTTT    T CA    T   TGCT AC                                                                                                                                                                                                                                                                                                               
    ||||    ||| ||||||||   ||||||    | ||    |   |||| ||                                                                                                                                                                                                                                                                                                                
    ACGT    GTC CCGCCTGG   ATGCAA    C TC    A   CCCA CG                                                                                                                                                                                                                                                                                                               
        ATTC   C        ---      ---- A  CAAA ---    -  AGCTCGTGGGTGATTAGAGTTGCGTATTACATATTTCAATATGTATTTTATAAATTTTTAATTATATAATTTGTCAACTCGTGGGTGTTTGTGATTTCACGAAATCGGCGAATCCAAGACTTCGACTTATATGTCGCGAGTCGTGGGCTCTATTGCTCTCAAGCTTAGAACCCCCTTCGTTAAGAGAAATCCAAACAATGAATTGAGGAAAGTATATAATGATTTGTAAAAGAGAAGAAAGAAGAAAAAAAGTTAGAAGAGGGTAAAAAGACGATTGTAAAGTTAGAATTGAAGAAGAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830218

CTTATGCACAGTGGCGGATCCAGGATTTTAAGATCATGGGTGCTCACTTTTTAATATAAATGTATAATTATTTTAATTATCGTGAAAATAAAAGGCTTATTATTAGAAATAAGACTTTTAGTCATAAGTTACCAAGCAAACTATGATTAATATAAATTATTTATTTTTAAAAAAAAGCTTCTAGTAGTACGATTCTCGACGAACTTTCATATTTTGAAGATATTGAATAATTGTATCATATCATTGCATGTTGAAAACTACAAATATTTATACTCTGGAGTTTTTAAAAACTTAAGTATTTTGTTGTAATAAATGAGATATAGGAAATTCAAAAAGTGAAAAAATAAACTAAAAAAGAAGAAGTTAAGATTGAAATGTTAGCAGAAAAATGGGAGAAGATTGAAAAAAAGAAGAAAGAAGAGAAAATGTTTAGTAATATATGAAAGGAGTTAAGTAACAAACCTAAAGAGAATTGCTTCCCCCAAGATTCGAACTCTCGTTATCTCGGGTGCTGAGCGCTGTATATTCAGCTTCAGAACCTAAGCGGCTAAAGCACTTTAGTGTTTGTGGGTGCTCAACTGTTTAATATATTAATTTTTAAATATTTTATGTATAACTTTATACATTATGCGTTGAGATTAGTGGGTGCTCGAGCACCCAAAACCTACAACGTAGGTCCGCCCCTGCTTATGCA

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