Plant MITE

SE3810219

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8537
Solanum tuberosum
SE3810219
Tc1/Mariner
St16
chr04:41128132-41128412
TA
TACTCCCTCCGTCCCATTTTATGTGGCAACATTT

Secondary structure and sequence

TSD TIR

5'

3'

                                  GACC         GTTTTAAGAAATAAATGAAGACTTTGAAATGTTTACCAAATTGCCCTTTAGAAAGTACACTTACTTTACTCTCTCCTCATAAATGTATTGGAGTA
TACTCCCTCCGTCCCATTTTATGTGGCAACATTT    GGGCACGGA                                                                                               
||||||||||||||||||||||||||||||||||    |||||||||                                                                                               T
ATGAGGGAGGCAGGGTAAAATACACCGTTGTAAA    GGAAAAACC                                                                                               
                                  ----         AGTCAGGGTTTTTCTTACAGTGAAAGGAATATACCATTCATAAATTTCCACGTTAAGGAAAAAATGGGAACAACCAGGGTGAATTAGAATTTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810219

TACTCCCTCCGTCCCATTTTATGTGGCAACATTTGACCGGGCACGGAGTTTTAAGAAATAAATGAAGACTTTGAAATGTTTACCAAATTGCCCTTTAGAAAGTACACTTACTTTACTCTCTCCTCATAAATGTATTGGAGTATTATTTTAAGATTAAGTGGGACCAACAAGGGTAAAAAAGGAATTGCACCTTTAAATACTTACCATATAAGGAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGTTGCCACATAAAATGGGACGGAGGGAGTA

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