Plant MITE

SE3850224

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8542
Solanum tuberosum
SE3850224
PIF/harbinger
To6
chr06:49420839-49421067
TTA
AGGGGTCGTTTGGTGTGAGGAATAG

Secondary structure and sequence

TSD TIR

5'

3'

TT              G  A       AAATAAATAGT       --  AGAAAATAGTGATGGATAAAGTTTTTGTATCTTGTTTGGGATAACTTATCCCACCATTTATATCATAGTG
  AGGGGTCGTTTGGT TG GGAATAG           GATGGGA  TA                                                                      
  |||||||||||||| || |||||||           |||||||  ||                                                                      A
  TCCCCAGCAAACCA AC CCTTGTT           GGGTCCT  TC                                                                      
AT              -  -       ------CAATA       AA  AACAGGAACAGGACCCCAATCGATAGGGCCCTATTGAATAGGGTGGTACATATACCCTATTACATAGGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850224

TTAGGGGTCGTTTGGTGTGAGGAATAGAAATAAATAGTGATGGGATAAGAAAATAGTGATGGATAAAGTTTTTGTATCTTGTTTGGGATAACTTATCCCACCATTTATATCATAGTGATGGGATACATTATCCCATATACATGGTGGGATAAGTTATCCCGGGATAGCTAACCCCAGGACAAGGACAACTAATCCTGGGATAACTTGTTCCCAACCAAACGACCCCTTA

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