Plant MITE

SE3820230

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8548
Solanum tuberosum
SE3820230
Mutator
M19
chr02:29316922-29317466
AAATTTAAA
GGGAAAAGGCTCAAATATGCCATCAAACTTTTAGAAAAGGCTCATTTATGCCATTCGTTAAAAAGTTTGGCTCATTATGCCATTACCGTTTAAGAAAAGGCTCATTCATGCCACTATTTTTTTAACAGTGGTTTTTTAAAACCATTTTTGACACGTGGCCAATTATAATTCGGCCACGTCATTATTATTTTTTTTAAAAAATTTCAAAATTCTGAACAAAAATTGAATTAAAATAACCC

Secondary structure and sequence

TSD TIR

5'

3'

AAATTTAAA                        A                                      A           -                                      C        T            T                                                         -          T                                C      AAATTTTTTAAATTTTTTAAA
         GGGAAAAGGCTCAAATATGCCATC AACTTTTAGAAAAGGCTCATTTATGCCATTCGTTAAAA GTTTGGCTCAT TATGCCATTACCGTTTAAGAAAAGGCTCATTCATGCCA TATTTTTT AACAGTGGTTTT TAAAACCATTTTTGACACGTGGCCAATTATAATTCGGCCACGTCATTATTATTTTTT TTAAAAAATT CAAAATTCTGAACAAAAATTGAATTAAAATAA CCATCC                     
         |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||                      
         CCCTTTTCCGAGTTTATACGGTAG TTGAAAATCTTTTCCGAGTAAATACGGTAGGCAATTTT CAAACCGAGTA ATACGGTAATGGCAAATTCTTTTCCGAGTAAGTACGGT ATAAAAAA TTGTCACCAAAA GTTTTGGTAAAAACTGTGCACCGGTTAATATTAAGCCGGTGCAGTAATAATAAAAAA AATTTTTTAA GTTTTAAGACTTGTTTTTAACTTAATTTTATT GGTAGA                     
AAATTTAAA                        C                                      -           T                                      A        -            C                                                         T          -                                T      TTCATTTCTGGTTGGGTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820230

AAATTTAAAGGGAAAAGGCTCAAATATGCCATCAAACTTTTAGAAAAGGCTCATTTATGCCATTCGTTAAAAAGTTTGGCTCATTATGCCATTACCGTTTAAGAAAAGGCTCATTCATGCCACTATTTTTTTAACAGTGGTTTTTTAAAACCATTTTTGACACGTGGCCAATTATAATTCGGCCACGTCATTATTATTTTTTTTAAAAAATTTCAAAATTCTGAACAAAAATTGAATTAAAATAACCCATCCAAATTTTTTAAATTTTTTAAAAATTTGGGTTGGTCTTTACTTAGATGGTTTATTTTAATTCAATTTTTGTTCAGAATTTTGAATTTTTTAATAAAAAATAATAATGACGTGGCCGAATTATAATTGGCCACGTGTCAAAAATGGTTTTGCAAAACCACTGTTAAAAAATAATGGCATGAATGAGCCTTTTCTTAAACGGTAATGGCATATATGAGCCAAACTTTTAACGGATGGCATAAATGAGCCTTTTCTAAAAGTTCGATGGCATATTTGAGCCTTTTCCCAAATTTAAA

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