Plant MITE

SE3810231

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8549
Solanum tuberosum
SE3810231
Tc1/Mariner
St1
chr11:42117928-42118237
TA
TACTCCCTCCGTCCCTATTTAGTTGTCCAT

Secondary structure and sequence

TSD TIR

5'

3'

         C      A             ------------ATTTCCTTTTTA     CCCTATTTAGTTGTCCATTTTGACAAATCAAGAAAGGACAACAAATTTTTTCCTATTATACCCTTATTTACACTTCTTGAAAATTTCTAAAAGTGTATGTTG
TACTCCCTC GTCCCT TTTAGTTGTCCAT                        GTTGT                                                                                                      
||||||||| |||||| |||||||||||||                        |||||                                                                                                       
ATGAGGGAG CAGGGA AAATCAACAGGTG                        CGTTG                                                                                                      
         A      A             AAATTTTTACTGTGTGTCTAATTC     TTACTAATCGTGTCACTTCAATGTTAAAATGGGAATACTGTTGAAAAGTGAAGTTTTAATGTTAGTGAAGAAACTTAAGTTCACTTTATTTAACCTCCTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810231

TACTCCCTCCGTCCCTATTTAGTTGTCCATATTTCCTTTTTAGTTGTCCCTATTTAGTTGTCCATTTTGACAAATCAAGAAAGGACAACAAATTTTTTCCTATTATACCCTTATTTACACTTCTTGAAAATTTCTAAAAGTGTATGTTGTTTTCCTCCAATTTATTTCACTTGAATTCAAAGAAGTGATTGTAATTTTGAAGTGAAAAGTTGTCATAAGGGTAAAATTGTAACTTCACTGTGCTAATCATTGTTGCCTTAATCTGTGTGTCATTTTTAAAGTGGACAACTAAAAAGGGACAGAGGGAGTA

Copy Cancel