Plant MITE

SE3820232

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8550
Solanum tuberosum
SE3820232
Mutator
M3
chr04:56003152-56003514
TTAAAAGAA
AAGGGAAAAAGGACAAATGTACTCCCGAACTATCGTAAATAGTATGTAGATACCCTCCGTCATATTTTTGGGACATTGATGCCCCTGTCGTCCAAAAACTAGAGCATATATGCC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAG                                        A                                     A             C                     CTTCACT        AGACTAAATAGGG       G  C           TC            A
       AAGGGAAAAAGGACAAATGTACTCCCGAACTATCGTAAAT GTATGTAGATACCCTCCGTCATATTTTTGGGACATTG TGCCCCTGTCGTC AAAAACTAGAGCATATATGCC       CTAACGGA             ACACGTG CA AATCTTATTCG  GATCCGATATTT 
       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||       ||||||||             ||||||| || |||||||||||  |||||||||||| A
       TTCCCTTTTTCCTGTTTATATGGGGGCTTGATAGCATTTA TATACGTCTATGGGAGGCAGTATGAAAACCCTGTAAC ACGGGGACGGTAG TTTTTGATCTCGTATATATGG       GATTGCCT             TGTGCAC GT TTAGAATAGGT  CTAGGCTGTAAA 
AAGAAAA                                        C                                     C             A                     TAAATAT        ----------ATA       A  A           GT            T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820232

TTAAAAGAAGGGAAAAAGGACAAATGTACTCCCGAACTATCGTAAATAGTATGTAGATACCCTCCGTCATATTTTTGGGACATTGATGCCCCTGTCGTCCAAAAACTAGAGCATATATGCCCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCACAATCTTATTCGTCGATCCGATATTTAATAAATGTCGGATCTGTGGATAAGATTATGACACGTGTATATCCGTTAGTATAAATGGTATATATGCTCTAGTTTTTAGATGGCAGGGGCACCAATGTCCCAAAAGTATGACGGAGGGTATCTGCATATCATTTACGATAGTTCGGGGGTATATTTGTCCTTTTTCCCTTAAAAGAA

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