Plant MITE

SE3810236

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8554
Solanum tuberosum
SE3810236
Tc1/Mariner
St4
chr06:33338496-33338758
TA
TACTCCCTCCGTCCACAATTAATTGTCATG

Secondary structure and sequence

TSD TIR

5'

3'

         C      AA   A        GTTTC      T        ACAATAAGAAC         CATTTTAC    TATATTTTCATCATAGTGATATGCAAAAAATTGCAACTTATAATACTTTTCGTATAGTT
TACTCCCTC GTCCAC  TTA TTGTCATG     CTTTTT AGAGTCAA           TTTGACTAA        GATG                                                           
||||||||| ||||||  ||| ||||||||     |||||| ||||||||           |||||||||        ||||                                                            
ATGAGGGAG CAGGTG  AAT AACAGTAC     GAAAAG TTTCAGTT           AAACTGATT        AAAA                                                           
         A      AA   A        AACGC      C        -----------         --------    ATTTCAATTTAATCTAATGCAATTAAGCTATAAATTTTTTATTATTAATCTATAAGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810236

TACTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCAAACAATAAGAACTTTGACTAACATTTTACGATGTATATTTTCATCATAGTGATATGCAAAAAATTGCAACTTATAATACTTTTCGTATAGTTTTTGAATATCTAATTATTATTTTTTAAATATCGAATTAACGTAATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTA

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