Plant MITE

SE3830238

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8556
Solanum tuberosum
SE3830238
hAT
Hat3
chr02:53575155-53575355
AAGATAAC
CAGGGGCAGAGGCG

Secondary structure and sequence

TSD TIR

5'

3'

AAGATAAC   G   A   G  ---CATA          -    ---     ACTCCCTCAGC    AATATTACTATTTCTATATGGTTAAAATTATTTTTTAGGT
        CAG GGC GAG CG       TAATGAGGGG TTCA   TCTGA           GAAA                                        
        ||| ||| ||| ||       |||||||||| ||||   |||||           ||||                                        A
        GTC CCG CTC GT       ATTATTCCCC AAGT   AGACT           ATTT                                        
CAATAGAA   A   C   G  CTTTAAA          C    TTT     -------CTTC    GTATGCTTGATCACCTTCCCCCAAGCTGTAGATAATATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830238

AAGATAACCAGGGGCAGAGGCGCATATAATGAGGGGTTCATCTGAACTCCCTCAGCGAAAAATATTACTATTTCTATATGGTTAAAATTATTTTTTAGGTATGTATAATAGATGTCGAACCCCCTTCCACTAGTTCGTATGTTTACTTCTCAGATTTTGAACCCCCTTATTAAAATTTCTGGCTCCGCCACTGAAGATAAC

Copy Cancel